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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.513SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HN.4.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XACSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.1.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
XZSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.6.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBJSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EJ.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DQ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.31.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.77SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BY.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GW.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.40SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.367SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.385SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.45SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.244SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JD.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EP.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.17.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.7.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.10.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FD.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KG.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HA.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.351 (Beta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.36SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HZ.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.19.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.100SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.43.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EU.1.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.595.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.495SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.294SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.453SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used