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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.211SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.474SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.297SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AH.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.280SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.597SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.45SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.72SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.85SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.66 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.72 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.133 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.5.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.43.7 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.33.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
B.1.493SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.351.2 (Beta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.640.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.352SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.251SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HC.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCJSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FT.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FZ.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.48SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EK.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.66SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GS.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.21.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
BA.5.1.37SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EE.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
ES.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.41SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.19.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.479SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.437SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.371SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.4.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.6.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HU.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used