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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
GY.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JC.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.564SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.461SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.486SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.603SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.70SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.606SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.601SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.186SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.324SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.525SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.480SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.214SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.304SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.214.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.577SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.639SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.2.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AZ.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.270SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.227SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
U.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.24SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.236SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21797.8South Korea
B.1.1.153SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.302SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.194SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.55SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.51SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.308SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.138SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.379SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.240SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.240.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.121.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.46SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.44SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.389SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.549SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.43.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.50 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used