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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XDNSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.8.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LV.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.54.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.30.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.1.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
MN.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.63SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LE.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LH.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HW.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
JN.1.55.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.18.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDK.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.2.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.1 (Omicron)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
BA.5.2.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4 (Omicron)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.37SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.60SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FH.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CJ.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HZ.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.69SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.98SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.71SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HT.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.90SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FB.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.18.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.26.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FK.1.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FK.1.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used