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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.177.51SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XRSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.350.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.254SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.39.1.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.418SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.9.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.40SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.122SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAJSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.431SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.168SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Q.6 (Alpha)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AZ.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.97SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.59SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.67SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.2.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAHSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBJ.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EP.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CL.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAUSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.1.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.25.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XADSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XABSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FT.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XALSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBWSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.1.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GY.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-1215.87South Korea
XAY.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.10.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used