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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
FR.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.2.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GP.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HL.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCDSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.44.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.37SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.45.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FP.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.102SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FK.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GN.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.13.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCCSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FK.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.21.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FP.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.92SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.42SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.35.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HV.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.4.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.8.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.45SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.4.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDRSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.43.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.7.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KV.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JD.1.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used