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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BF.7.14.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DY.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.48SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.49SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.14.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.4.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GY.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.57SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FU.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18758.6South Korea
XBB.1.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.57SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.2.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.10.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.9.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.76SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LU.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LF.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LB.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.16.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LW.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LP.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LB.1.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.3.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
ML.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LB.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
MM.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.7.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.2.3.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LB.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.2.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used