Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.177.51EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
BF.17EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BA.2.28EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
XREWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-11629.5South Korea
B.1.350.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.254EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.39.1.1 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.418EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.9.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.40EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.122EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
XAJEWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
B.1.431EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.168EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
Q.6 (Alpha)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AZ.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.97EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.36.18EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.177.32EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.59EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.177.67EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
BN.1.2.8EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
XAHEWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BA.5.2.5EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
XBJ.3EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
EP.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
BA.4.1.5EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BA.2.4EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
CL.1.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
XBF.8.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
XAUEWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
XAY.1.1.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
BA.2.25.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
XADEWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
XABEWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
CH.1.1.4EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
FT.4EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
XALEWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
XBWEWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BA.2.3.7EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
XAY.1.1.3EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
BA.2.19EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
GY.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
XBF.10EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
GA.8EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-1649.2South Korea
XAY.1.1.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
XBB.1.38EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
CT.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BA.2.10.4EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
FF.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used