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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.497NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EN.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.30 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.85 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.6.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FK.1.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBFNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.11.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBF.7.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.5.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FP.2.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JW.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JL.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.571NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.55 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XAMNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.239NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.574NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.355NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.7.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-21208.1South Korea
B.1.403NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.27NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HH.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KN.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.43.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.332NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JB.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.86.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JW.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.3.18NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBC.1.6.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.39NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.141NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.591NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.468NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.131 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.586NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.366NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.380NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.148NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.382NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.356NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.376NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used