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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
CP.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.1.2.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CK.1.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.56.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.13.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.37NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CK.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBC.1.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.11.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDLNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.17NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.29.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.29.2 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BC.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.10.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.10.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.56NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.29NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.338NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BG.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.20.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XVNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.38.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.1.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.80NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.134NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CZ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BY.1.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.1.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.2.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CW.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.42NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XAY.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.46NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBC.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.258.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.17.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.23NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.562NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.219NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
N.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XANWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AZ.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used