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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.215NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.20NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.82NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.462NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.218NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EE.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.52NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBF.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.4.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DS.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.32NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.58NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.631NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.627NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.519NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.514NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GT.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.87NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XAPNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.1.4.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.6.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.47.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBF.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CF.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DN.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DJ.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBC.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BW.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.10.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FW.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.29NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.55NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AP.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AK.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.98.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.13.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.34.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.124.1.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.203NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.8.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GY.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.7.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.254NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.36.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.122.2 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used