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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.245NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.403NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.636NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-19061.8South Korea
B.1.126NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.47NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDQ.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JD.1.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBC.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.31.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.27NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.3.17NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FD.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.44NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GN.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FW.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.1.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HC.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.93 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.31.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GW.5.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.38NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.2.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DN.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.3.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BW.1.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.312NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.13.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.220NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.142NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.523NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.36.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.418NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.389NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.53NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.363NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HV.1.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.405NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.282NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.228NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-17723.5South Korea
B.1.1.174NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-17723.5South Korea
AY.88 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.106 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.346NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.93NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used