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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.5.2.38NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.15.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.15NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.59 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBRNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DJ.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AZ.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.193NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-18487.6South Korea
BL.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FP.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DA.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.68 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.16.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DN.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.160.28NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.5.2 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DN.1.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.84 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBLNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EK.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.466.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.36NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.222NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.470NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.31 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.51 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.122.5 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.40.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.28NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.13.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.10.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GS.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HG.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.323NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FU.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FN.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.74NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.53NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JB.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDK.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.58NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.1.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used