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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.257NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.5.4 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.323NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.15NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.105 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.4 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.9 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.398NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.94 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.18NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.18NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.17NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.164NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.275NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.258.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.58NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.81NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.419NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.151NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBQNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.6.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CR.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BV.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.4.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GS.7.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XWNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KG.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDJNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.3.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.5.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.36.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.86.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDFNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.575.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.3.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.620NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.2.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDMNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.16NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LV.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.23NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GE.1.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used