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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.2.3.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.23.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.21.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.5.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.5.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.28NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.42NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.4.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GR.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.568NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
P.1.13 (Gamma)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.372NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.634NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.37.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.630NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.360NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.578NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.544NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.448NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.425NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.354NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.1.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.3.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDDNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.53NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.60NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.6.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.28NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
P.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
P.2 (Zeta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.33NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
N.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.499NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
N.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.212NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.61NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-17723.5South Korea
JN.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.86NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.41.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GS.4.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JF.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.5.1.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JG.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.28NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used