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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
GE.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HN.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.29NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.11.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.3.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GL.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.8.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.3.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBC.1.6.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GW.5.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KC.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.3.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.5.5.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.5.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FR.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.4.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FR.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FU.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBL.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.24.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.3.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.9.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FE.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FR.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GY.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBC.1.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.4.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HH.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GY.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.5.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HH.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.85NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FU.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.18.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.15NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used