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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.334NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.359NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.302NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.222NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.434NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.467NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.110.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.23 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.9 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.74 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.277NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.294NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.81NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HV.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.2.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KK.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.17NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FG.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GN.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.1.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.413NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.5.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JD.1.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.268NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.409NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FG.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KV.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.31NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.587NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.232NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.60NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CD.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.4.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DE.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.333NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.62NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.23NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.3.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.160NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JV.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XCYNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.16NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EK.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HV.1.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used