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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.5.94NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.2.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LU.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LF.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.16.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LW.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LP.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.3.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
ML.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.1.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
MM.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.7.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.3.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.2.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.1.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.7.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.1.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.15NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GE.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HE.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.33NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.4.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.99NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HW.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.4.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FE.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HA.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GM.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FT.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JD.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HT.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.20NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JH.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CK.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.34.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.2.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used