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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
N.7NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.515NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.287NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.431NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
C.12NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.170NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.23NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.506NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.6.8NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.438.3NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.27NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.30NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.188NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.39NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-3193.21Germany
CA.6NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BM.6NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BA.5.2.46NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BA.5.7NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
CU.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
CA.2NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.177.83NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-3342.44Germany
B.1.177.40NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.160.27NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AY.4.2.4 (Delta)NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.161NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.58NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.177.75NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.411NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.217NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.177.35NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AY.17 (Delta)NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.41NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.527NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
C.18NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.500NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.147NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.487NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.177.68NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.121NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AA.5NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AS.2NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.115NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AY.127.1 (Delta)NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.88NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.168NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-3342.44Germany
B.1.36.39NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.57NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AH.3NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.289NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.365NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used