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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.444NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-3342.44Germany
AW.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.268NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.344NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.103NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.485NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.119NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.276NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.111NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.36.27NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.36.19NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.336NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.400.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.537NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-5370.98Germany
B.1.548NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-3342.44Germany
AY.24.1 (Delta)NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.492NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.540NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-13723.7Germany
B.1.487NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.118NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.501NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.226NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.546NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.194NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.429.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
P.1.9 (Gamma)NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AY.25.1.1 (Delta)NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.203NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.157NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.176NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AY.3.4 (Delta)NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.391NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.393NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.432NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.388NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
P.6NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.48NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.112NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.274NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-3342.44Germany
B.1.515NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-3342.44Germany
B.1.258.23NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-3342.44Germany
B.1.370NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.118NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.137NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.309NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.632NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.72NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.108NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.332NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XAANCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used