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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.5.2.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XASNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.3.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BE.1.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.53NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BL.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.59NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BR.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.5.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBDNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EB.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CN.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.17NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BG.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.1.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.576NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.325NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.22NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.521NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19760.5South Korea
B.1.378NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.206NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.28NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19194.1South Korea
B.1.1.77NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.13.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HV.1.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.3.16NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BM.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBENWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BE.1.4.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.3.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HC.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.93 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.31.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GW.5.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.38NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19760.5South Korea
EG.2.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DN.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.3.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BW.1.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.312NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.13.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.220NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used