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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
EG.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FK.1.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FK.1.2.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FK.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.1.1.18NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.26NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.76NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CK.1.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.6.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.75.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.7.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.40NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DM.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.60NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.49NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CK.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.13NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.9.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDK.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.16NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KT.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LE.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.7.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.49.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.3.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LB.1.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.3.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GE.1.2.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.58.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.8.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.1.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDD.1.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDNNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LT.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.8.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LV.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.54.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.30.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.1.1.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MN.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used