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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
HU.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HV.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.27NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.22NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GP.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.3.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBVNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DL.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.15NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.529 (Omicron)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.41.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.39NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.20NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.33 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.15NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.14.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.14.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1 (Omicron)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.17.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.99.2 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.52NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.42NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KB.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
MJ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.1.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.39.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.58.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.18.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LF.4.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDK.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.20NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.7.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.18.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.16.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.18.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.4.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-17028.5South Korea
KP.3.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.65.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LF.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDVNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KS.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
MK.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-4273.88South Korea
KP.4.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.4.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.7.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used