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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.5.30EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.19.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.5.100EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.16.19EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.43.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
EU.1.1.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.5.18EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.507EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.178EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.273EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.211EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.474EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.160.14EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.297EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AH.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.280EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.597EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.45EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.72EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.43EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.85EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.66 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.72 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.133 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.5.1 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.43.7 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.33.1 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XDEWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.493EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.351.2 (Beta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.640.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.352EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.251EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HC.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XCJEWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FT.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FZ.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FY.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.497EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
EN.1.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.30 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.85 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.6.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.21EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FK.1.3.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBFEWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.5.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.11.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBF.7.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FY.5.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used