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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.2.80SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.134SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CZ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BY.1.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BM.1.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BM.2.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CW.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.42SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.46SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.17.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.562SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.219SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-3577.39South Korea
XASWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18758.6South Korea
AZ.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.114SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.199SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.112SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.190SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.552SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.89SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
M.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.333SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.429SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.463SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
U.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.373SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.80SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.433SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.36.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AN.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.221.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.242SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.449SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.152SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.146SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
D.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.81SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.24SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used