Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.177.62SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.82SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.38.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.79.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.47SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.55SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BY.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EA.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XJSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BR.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.8.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBSSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.99SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.343SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.17 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.25.1.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.409SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.83SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.310SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.362.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.162SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Y.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.86SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.154SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.4.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.2.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.41SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.137SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.446SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.76 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.398SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.163SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.3 (Theta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.38.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAVSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.1.4.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BM.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.77SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CP.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.550SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used