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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.101SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.478SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.86SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.543SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.139SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.221SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.362SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.265SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.585SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.351SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.389SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.549SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.43.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.50 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.266SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.253SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.305SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AA.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.241SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.326SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.255SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.303SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AA.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.173SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-14485.7South Korea
B.1.362.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.48SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.520SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.521SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.383SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.117SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.157SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.187SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.626SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.629SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.61 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.75.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GC.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.524SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used