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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.5.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BM.4.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.6.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.12.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LZ.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KW.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KU.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.4.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.55SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HH.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FM.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FK.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.7.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EU.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EJ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BM.1.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.123.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.9.2.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EW.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.37SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EW.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBPSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.36SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.37SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.277SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.28 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.272SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.371SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AA.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.353SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.407SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used