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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.36.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.623SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.214.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.588SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.210SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.567SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.541SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.24SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.189SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.563SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.34SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.258SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.426SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.399SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.337SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.539SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.54SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.164SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KY.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.392SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.377SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.5.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BB.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HH.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.22.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GY.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HW.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.46SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GB.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.72SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FE.1.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HH.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.3.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used