Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.195SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.321SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.379SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.78SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.16SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.231SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.49SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.67SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.190SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.120SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AM.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AA.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.249SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AA.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.505SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.74SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.406SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.115SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.29SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AA.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.42.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.348SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.428.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AJ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.459SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.160.29SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.415.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.243.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.98SWon-SCTACATGCACCAGCAACTGT20502311423133F-10681.4South Korea
B.1.566SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.480SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.579SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
N.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
P.1.11 (Gamma)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.435SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.445SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.124SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.384SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
XAQSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.3.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.569SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.524SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.23SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.596.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.473SWon-SCTACATGCACCAGCAACTGT20502311423133F-17315South Korea
B.1.595.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.76.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.38.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.38.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BM.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used