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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.351.5 (Beta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FZ.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.9.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBC.1.6.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-775.945South Korea
FL.4.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FQ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JB.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.17SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.3.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FZ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DV.7.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.30.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.68SWon-SCTACATGCACCAGCAACTGT20502311423133F-17417.6South Korea
CD.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.122.3 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AD.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.26.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.10.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XAY.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CY.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.3.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBTSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.33SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.29SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.1.28SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CL.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BM.1.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBMSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.34SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CB.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BR.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CL.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.2.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CH.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EF.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BR.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.1.2.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CP.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BE.4.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.256SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.26SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.77SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.34SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used