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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.2.3.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
EU.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
XBB.2.3.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GS.4.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
XBB.2.3.11SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GS.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GE.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GM.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GJ.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
HH.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GJ.5.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
JS.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
HG.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GE.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
XCQSWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GS.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GJ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
JM.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GS.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
XBB.1.16.15SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GS.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GJ.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GE.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GM.3.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GJ.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GZ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GJ.1.2.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GE.1.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
JE.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
KH.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
XCWSWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
XBB.2.3.21SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
JS.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
HH.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
JE.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GJ.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GJ.1.2.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GJ.1.2.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
HH.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
XBB.2.3.15SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
JY.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GS.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GK.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GE.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GE.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GJ.1.2.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GJ.1.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
JE.1.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
KT.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
JM.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used