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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.5NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.283NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BE.12NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.96NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
L.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.513NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.338NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.284NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.9.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.498NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.184NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.187NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
D.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AE.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.110.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.342NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.500NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.511NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.428.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.506NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.482NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.335NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.36.36NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.499.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.38NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.116NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.134NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.393NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.381NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
C.32NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AE.8NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.516NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.526NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.279NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.168NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.36.39NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.57NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AH.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.289NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.365NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.252NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.223NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.640.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.5NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.11 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.428NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.355NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.34.1.1 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.71 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.33.2 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used