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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.226NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.546NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.194NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.429.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
P.1.9 (Gamma)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.25.1.1 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.203NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.157NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.176NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.3.4 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.391NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.393NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.432NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.388NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
P.6NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.48NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.112NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.274NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.515NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.258.23NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.370NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.118NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.137NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.309NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.632NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.72NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.108NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.332NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.310NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.185NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.258.9NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.329NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.229NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.342NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.90NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.169NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.53NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.4.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.528NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.175NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.6.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.483NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.181NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.113NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.594NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.328NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.13NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.145NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.547NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.247NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used