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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
A.23NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.596.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.473NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.595.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.76.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.38.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.38.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BM.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.50NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.494NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.167NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.165NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.554NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.243.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
A.2.5.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.450NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.130NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AW.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.268NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.344NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.103NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.485NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.119NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.276NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.111NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.36.27NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.36.19NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.336NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.400.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.548NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.24.1 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.492NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.487NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.118NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.109NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.361NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.38NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
A.12NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.417NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AM.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.258.20NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.36.37NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.319NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.182NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.430NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.331NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.19NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.112.3 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.37NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
N.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used