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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
GN.1.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.13.3.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GW.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.424NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.64NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AH.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.327NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.396NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.129NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AK.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.221.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.224NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.14NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.618NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.458NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.17NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.258.22NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AG.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.258.16NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
W.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.264.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.338NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BG.6NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.20.1 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XVNCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BF.38.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.80NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.134NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
CZ.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BY.1.2.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BM.1.1.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BM.2.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
CW.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.5.2.42NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XAY.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
CH.3.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.46NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBC.1.1.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.258.14NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.17.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.23NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.562NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.219NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
N.8NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XANCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AZ.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.114NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.39NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.199NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.133NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used