Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.581NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.330NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.205NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.177NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.301NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.308NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.210NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.325NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.590NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.116NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.496NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.438.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.49 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.507NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.178NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.273NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.211NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.474NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.160.14NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.297NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AH.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.280NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.597NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.45NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.72NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.43NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.85NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.66 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.72 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.133 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.5.1 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.33.1 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XDNCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.493NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.351.2 (Beta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.640.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.352NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.251NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
HC.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XCJNCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FT.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.5.48NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EK.2.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.5.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.5.66NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.5.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EG.1.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GS.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.258.17NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.1.21.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used