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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBC.1.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FY.9NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.31.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GK.1.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.5.27NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.2.3.17NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FD.5NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.44NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.5.26NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GN.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FW.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FY.1.2.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
HC.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.93 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.31.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.38NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EG.2.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
DN.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
HK.3.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BW.1.1.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.2.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.312NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.13.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.220NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.142NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.523NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
C.36.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.418NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.53NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.363NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
HV.1.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.405NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.282NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.228NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.174NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.106 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.346NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.93NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBLNCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EK.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.466.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
C.36NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.222NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.470NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.31 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.51 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.122.5 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.40.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.28NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used