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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.437NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.371NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.4.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.6.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HU.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.1.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KJ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JC.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.625NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HD.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GY.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FZ.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.497NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EN.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.30 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.85 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.6.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.21NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FK.1.3.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBFNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.11.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBF.7.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.5.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FP.2.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.2.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JW.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JL.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.571NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.55 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XAMNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.239NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.574NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GA.7.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.403NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.27NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.30NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GW.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.40NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.2.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.367NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.1.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.3.13NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.385NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.45NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.244NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used