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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.177.14NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.618NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.458NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.17NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.258.22NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AG.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.258.16NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
W.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.264.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.190NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.552NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.89NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
M.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.333NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.429NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.463NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
U.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.373NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.80NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.433NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AN.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.28NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.221.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.242NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.160.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.449NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.152NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.146NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
D.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.81NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.258.24NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.160.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.160.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.71NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.445NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.133NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.18NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.466NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.489NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.363NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.95NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.36.26NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.531NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.45NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.200NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.299NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.55NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.149NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.300NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used