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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.47NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.182NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.218NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.12.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.22 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.36.33NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.405NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.296NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.412NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AC.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.27NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.421NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.364NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.82NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.61NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.47NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.38NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.251NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.2.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.132 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.160.17NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.1.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.19NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CS.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.83NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BJ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDGNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GA.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KD.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCSNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GA.7.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.40NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CR.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KB.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CJ.1.3.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XANNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.4.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DV.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.53NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EU.1.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.43NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HU.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JB.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AD.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used