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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.142NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.523NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.418NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.389NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.53NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.363NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HV.1.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.405NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.282NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.228NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.174NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.88 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.106 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.346NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.93NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBLNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EK.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.466.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.36NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.222NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.470NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.31 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.51 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.122.5 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.40.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.28NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.13.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.10.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GS.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HG.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.323NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FU.1.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FN.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.74NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.53NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JB.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDK.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.58NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.1.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.3.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.512NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.349NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.401NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.362NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.2.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used