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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.240NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.240.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.46NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.44NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.120.2 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.528NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.91 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.39NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.617NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.383NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.40NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.95 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.189NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.13NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.545NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.482NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.3.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GY.1.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.3.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JC.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.564NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.461NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.486NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.603NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.70NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.606NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.601NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.186NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.324NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.99NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBF.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.4.17 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.25.1.2 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.409NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.83NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.310NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.362.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.162NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Y.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.86NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.154NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.2.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.41NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.137NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.446NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.76 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used