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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.100 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.44 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LD.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KW.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KR.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.15.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.50.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LB.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LF.3.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LR.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KR.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LQ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDK.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.4.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JF.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.3.19NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JD.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDANWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JG.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.1.5.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JF.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JD.1.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.14NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.7.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KW.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MF.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LF.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KR.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.7.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KR.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.49NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MF.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DL.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.15NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.529 (Omicron)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.41.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.39NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.3.20NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.33 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BE.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used