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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.311NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.369NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.240NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.192NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.39.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
ME.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LE.1.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDR.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.49.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HV.1.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.1.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JD.1.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.441NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.509NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.293NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.225NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.637NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.39 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.26 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.103 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.3 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.18.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MB.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LE.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LF.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MD.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LP.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.29.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.24.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.18.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LU.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.40NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MG.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.59NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LG.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LK.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LB.1.7.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.25 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.25.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.25.3 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.75 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used