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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.400NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.25NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.2.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.16 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.46.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.37 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.336NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.317NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.397NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.62NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GA.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.23NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.3.13NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.160NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JV.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCYNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.16NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.1.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EK.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HV.1.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HV.1.6.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EF.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BU.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.38NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.34NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.7.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CJ.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.21NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.6.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.7.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.3.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.22NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.7.19NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FA.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EE.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.72NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBJ.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.14NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CK.2.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HE.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JM.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HV.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KK.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.1.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JG.3.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.27.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HV.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.1.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used