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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
KP.3.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MM.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.7.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2.3.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LB.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.3.2.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.3.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.1.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.7.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.1.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2.15NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HV.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.4.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.8.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.45NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.4.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDRNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.38NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.43.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.28NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.18NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.29NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.7.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KV.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.15NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.39NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JD.1.1.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.43NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.21NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JC.5.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.3.3.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2.3.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.14NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.28NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.20.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.110NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.86.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GN.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.8.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HB.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used