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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.395EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.37EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.61EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.40EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.153EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.33EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.10EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.62EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.391EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.448EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
C.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
Q.1 (Alpha)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.46 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.99 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.243EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
R.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.216EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.471EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
C.16EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.420EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
L.3EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.36EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.518EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.551EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
C.17EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.207EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.604EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.111EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.619EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
C.36.3.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
C.36.3EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
A.23.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.316EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AZ.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.436EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.558EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.518EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.368EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.404EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.306EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.328EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
A.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.533EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.525EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.480EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.214EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.304EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.214.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.577EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.639EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used