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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.116EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.134EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.393EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.381EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
C.32EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AE.8EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.516EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.526EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.279EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AE.7EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
N.6EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.36EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.407EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.20EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.423EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.281EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AE.6EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.230EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.535EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
A.7EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
A.24EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.564.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.345EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.53EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.450EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.334EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.589EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.335EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.169EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.43EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.42EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AE.4EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.442EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.75EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.51EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.106EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
D.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.593EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.438.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.214EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.284EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.351.3 (Beta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.318EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
R.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.29 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.5EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.283EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.96EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
L.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.497EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used