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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.596NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
W.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.565NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.361NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.101NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.478NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.177.86NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.543NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.139NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
C.31NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.221NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.362NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.265NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.585NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.351NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.36.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.213NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.12NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.341NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.89NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.36.23NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.177.30NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.315NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.204NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.177.50NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.170NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.232NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.177.84NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.76NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.301NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.36.7NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.269NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.234NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
Z.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
V.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.36.22NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.282NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.131NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.274NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
A.25NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.235NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.177.65NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.45NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.165NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.258.12NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.525NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.480NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.214NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.304NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.214.2NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used